PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA02G05960.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family SBP
Protein Properties Length: 327aa    MW: 35685 Da    PI: 9.1824
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA02G05960.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP125.91.7e-3968145178
                      --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
              SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                      +CqvegC ++l  +k+yhr+h+vCevhsk p v+v+g+e+rfCqqCsrfh+lsefD++krsCrrrL +hn+rrrk+q+
  ONIVA02G05960.1  68 RCQVEGCGVELVGVKDYHRKHRVCEVHSKFPRVVVAGQERRFCQQCSRFHALSEFDQKKRSCRRRLYDHNARRRKPQT 145
                      6**************************************************************************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.106.3E-3361130IPR004333Transcription factor, SBP-box
PROSITE profilePS5114131.79566143IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.31E-3867149IPR004333Transcription factor, SBP-box
PfamPF031101.9E-3069142IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MDWMPPPKPT SPRSPPLLWD WADAAVPGSS SGEVSATAAA AAAAHPGRRR KEKRGRAEEG  60
GGGGGEVRCQ VEGCGVELVG VKDYHRKHRV CEVHSKFPRV VVAGQERRFC QQCSRFHALS  120
EFDQKKRSCR RRLYDHNARR RKPQTDVFSY ASARPPSSLL FDDNRQISFV WNKAPLSHVR  180
PFAISPWESS SEVGTTDGHI YLDKSHISKS LPAFNTDIDE LLPMKGPDAS LTASKFDGAP  240
DLQRALSLLS SSSCGLPDPV QQASRVIQFT GASQNNRELP PLNGGNSASA SCANVQTIAQ  300
PAQLVRFTMD ASSNACQSNF FGLNQIN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A4e-2562142484squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14752RRRKEK
2124141KKRSCRRRLYDHNARRRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0614840.0AK061484.1 Oryza sativa Japonica Group cDNA clone:006-308-H09, full insert sequence.
GenBankAK0687020.0AK068702.1 Oryza sativa Japonica Group cDNA clone:J013159I15, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015623076.10.0PREDICTED: squamosa promoter-binding-like protein 4 isoform X2
SwissprotQ6H5091e-142SPL4_ORYSJ; Squamosa promoter-binding-like protein 4
TrEMBLA0A0E0G2390.0A0A0E0G239_ORYNI; Uncharacterized protein
STRINGBGIOSGA007643-PA0.0(Oryza sativa Indica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62712952
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43270.39e-38squamosa promoter binding protein-like 2